Not sure. Can you run this command

cd /home/quadrellis/civ_ptsd/structural_fs/C02DL_t1/label mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab C02DL_t1 rh white

and send the terminal output. Does it not fail for the left hemi?

Also, run tksurferfv C02DL rh inflated -annot BA_exvivo.thresh.annot

to see if there is a problem with the annotation

doug

On 12/07/2015 05:57 PM, Scott Quadrelli wrote:

Hi All,

I am trying to track down the source of an error on one of my first runs using freesurfer 6.

I have attached the relevant logs. Any help would be much appreciated.

Cheers,

Scott

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