check the talairach.xfm to see if it's accurate. If not, either fix it or run without it. If it is, you can disable the check (see recon-all -help)

cheers Bruce On Thu, 14 Jan 2010 mmoayedi@uhnres.utoronto.ca wrote:

Hi Everyone,

Here is a newish error I've encountered- does anyone know how to fix it, or what it means?

status file for recon-all:

Thu Jan 14 19:48:44 EST 2010 #@# MotionCor Thu Jan 14 19:48:50 EST 2010 #@# Nu Intensity Correction Thu Jan 14 19:49:05 EST 2010 #@# Talairach Thu Jan 14 19:51:03 EST 2010 #@# Talairach Failure Detection Thu Jan 14 19:52:05 EST 2010 Linux 2.6.23.1-21.fc7 #1 SMP Thu Nov 1 21:09:24 EDT 2007 i686 i686 i386 GNU/Linux

recon-all exited with ERRORS at Thu Jan 14 19:52:05 EST 2010

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recon-all.error: PWD /storage/AllUsers/Nathalie/FreeSurferData/Subjects/A1/a1/mri CMD talairach_afd -T 0.005 -xfm transforms/talairach.xfm

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from command line:

talairach_avi done

cp transforms/talairach.auto.xfm transforms/talairach.xfm

#-------------------------------------------- #@# Talairach Failure Detection Thu Jan 14 19:52:05 EST 2010 /storage/AllUsers/Nathalie/FreeSurferData/Subjects/A1/a1/mri

talairach_afd -T 0.005 -xfm transforms/talairach.xfm

ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0001, pval=0.0000 < threshold=0.0050) Linux 2.6.23.1-21.fc7 #1 SMP Thu Nov 1 21:09:24 EDT 2007 i686 i686 i386 GNU/Linux

recon-all exited with ERRORS at Thu Jan 14 19:52:05 EST 2010

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As usual, any, and all help, is much appreciated!!!

Massih

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