Hi free surfers,
I have run the xhemi process on the subjects for my study. The study is on stroke patients and their lesions are a mix of left and right hemispheres. In analyzing the results, we want to look at correlations between fmri activation in M1 and the cortical thickness of M1 ipsilesional and contralesional. To do so, I followed instructions written out in response to a question about xhemi on the mailing list:
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-December/026823.h...
My question, is there a way when running the analysis step:
*# Analyze *>* mri_glmfit --y lh.lh-rh.thickness.sm05.mgh --glmdir *>* glm.lh.lh-rh.thickness.sm05 \ *>* --osgm --surf fsaverage_sym lh *>
Can I modify this command line to include my fmri data and run that correlation also?
Thank you,
Marissa
yes, that will work
On 04/07/2017 11:11 AM, Marissa Pifer wrote:
Hi free surfers,
I have run the xhemi process on the subjects for my study. The study is on stroke patients and their lesions are a mix of left and right hemispheres. In analyzing the results, we want to look at correlations between fmri activation in M1 and the cortical thickness of M1 ipsilesional and contralesional. To do so, I followed instructions written out in response to a question about xhemi on the mailing list:
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-December/026823.h...
My question, is there a way when running the analysis step:
/# Analyze />/mri_glmfit --y lh.lh-rh.thickness.sm05.mgh --glmdir />/glm.lh.lh-rh.thickness.sm05 \ />/--osgm --surf fsaverage_sym lh /> Can I modify this command line to include my fmri data and run that correlation also? Thank you, Marissa
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Marissa Pifer