Hello Doug The Siemen's Trio gives us Diffusion weighted images in the form of MR.10284.746.There are no extensions such as .dcm or .ima I can convert the dicom to nifti .nii format using SPM or FSL.But neither program extracts the bval or bvec information. I am working on Mac OsX 10.5 and am using FS v4.3.1 I tried using mri_convert subject/MR* dwi.nii -it siemens_dicom I am trying to ckeck the quality of the DWI and hence would like to perform eddy current correction and preprocess the images to generate FA maps.
Thanks in advanceRaka
Just give it one file from the series you want to convert.
doug
ps Please consult surfer.nmr.mgh.harvard.edu/fswiki/BugReporting for suggestions on how to make bug reports. Thanks!
raka maitra wrote:
Hello Doug The Siemen's Trio gives us Diffusion weighted images in the form of MR.10284.746. There are no extensions such as .dcm or .ima I can convert the dicom to nifti .nii format using SPM or FSL. But neither program extracts the bval or bvec information. I am working on Mac OsX 10.5 and am using FS v4.3.1 I tried using mri_convert subject/MR* dwi.nii -it siemens_dicom I am trying to ckeck the quality of the DWI and hence would like to perform eddy current correction and preprocess the images to generate FA maps. Thanks in advance Raka
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