Martin,

There isn't one command to do this, but sometimes it is easier to run things piece-wise using the -no<command> flags. To rerun something starting at -calabel you could use:

Recon-all -autorecon2 -nogcareg -nocanorm -nocareg -nocareginv -normneck -noskull-lta -s <subjid>

Jenni

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Martin Ystad Sent: Tuesday, June 13, 2006 5:57 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Resuming recon-all

Hi, some of my subjects crash due to memory-failure way into the recon-all stream. Is there any way I can resume the processing stream from where it crashed without having to write all the individual commands for the rest of the stream? For example, if my subject crashed during autorecon2 -calabel, would there be a command that re-runs -calabel and the rest of the autorecon2 stream?

Thanks,

Martin Ystad University of Bergen, Norway. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer