Hi,
I downloaded the entire MNI package. Although I see all these MNI files, I still get the same error, file not found. Any clues why this might be?
Thanks,
Arvind Gururajan
On 9 Jun 2005, Bruce Fischl wrote:
just download and install the whole MNI package. Much easier than trying to install various pieces....
On Thu, 9 Jun 2005, Arvind Gururajan wrote:
Hello,
I am very new to Freesurfer. Could anybody please tell me which
specific
MNI tool, I need to install?
I tried the following command.
./recon-all -smooth1 ZM ######################################## program versions used $Id: recon-all-nmr,v 1.37 2004/01/06 22:21:48 tosa Exp $ $Id: mri_motion_correct2,v 1.7 2004/01/16 20:25:10 tosa Exp $fire mri_convert --version $ strings: rawtominc:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: minctracc:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: mincresample:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: mincaverage:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory $Id: talairach2,v 1.5 2003/08/28 21:45:48 tosa Exp $ mri_convert --version $ strings: mritotal:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: nu_correct:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ ####################################### ERROR: Flag ZM unrecognized. -smooth1 ZM
The folder ZM has only one orig file in the surf directory. There are
no
raw data(.COR files). Please let me know your feedback.
Sincerely,
Arvind Gururajan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Arvind,
Hi. On what platform are you running? Linux?
Did you follow the special installation instructions, involving making the symbolic links? Lastly, are the tools in your path?
If you are feeling brave, an alternative to installing the binaries is to compile the MNI package from source on your platform, and install those binaries. Instructions to do this are here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/mni.srcbuild.README
and the gzip file is here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/mni.srcbuild.tar.gz
Nick
On Fri, 2005-06-10 at 12:20 -0500, Arvind Gururajan wrote:
Hi,
I downloaded the entire MNI package. Although I see all these MNI files, I still get the same error, file not found. Any clues why this might be?
Thanks,
Arvind Gururajan
On 9 Jun 2005, Bruce Fischl wrote:
just download and install the whole MNI package. Much easier than trying to install various pieces....
On Thu, 9 Jun 2005, Arvind Gururajan wrote:
Hello,
I am very new to Freesurfer. Could anybody please tell me which
specific
MNI tool, I need to install?
I tried the following command.
./recon-all -smooth1 ZM ######################################## program versions used $Id: recon-all-nmr,v 1.37 2004/01/06 22:21:48 tosa Exp $ $Id: mri_motion_correct2,v 1.7 2004/01/16 20:25:10 tosa Exp $fire mri_convert --version $ strings: rawtominc:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: minctracc:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: mincresample:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: mincaverage:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory $Id: talairach2,v 1.5 2003/08/28 21:45:48 tosa Exp $ mri_convert --version $ strings: mritotal:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory strings: nu_correct:: No such file or directory strings: Command: No such file or directory strings: not: No such file or directory strings: found.: No such file or directory $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ ####################################### ERROR: Flag ZM unrecognized. -smooth1 ZM
The folder ZM has only one orig file in the surf directory. There are
no
raw data(.COR files). Please let me know your feedback.
Sincerely,
Arvind Gururajan
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Arvind Gururajan -
Nick Schmansky