I parcellated a subject using parcellate_subject, and was trying to see the labels. Doing File->Label->Import annotation and selecting lh.aparc.annot makes tksurfer crash. Trying to convert annotations to labels using mri_annotation2label givies a bus error. What could be the problem? Running Max OSX 10.3.6.
thanks, Rutvik
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% mri_annotation2label --subject 137 --hemi lh --outdir ./label --table $FREESURFER_HOME/Simple_surface_labels2002.txt
subject = 137 annotation = aparc hemi = lh outdir = (null) surface = white
Reading surface /usr/local/freesurfer/subjects/137/surf/lh.white Loading annotations from /usr/local/freesurfer/subjects/137/label/lh.aparc.annot reading colortable from annotation file... colortable with 85 entries read (originally /space/neo/5/recon/christophe/Simple_surface_labels2002.txt) reading colortable from annotation file... *** malloc_zone_calloc[22282]: arguments too large: 3221220448,520 CTABreadFrom: could not allocate -1073746848 bin table Cannot allocate memory Bus error %
sounds like a byte ordering problem under OS/X. We'll look into it.
Bruce
On Wed, 5 Jan 2005, Rutvik Desai wrote:
I parcellated a subject using parcellate_subject, and was trying to see the labels. Doing File->Label->Import annotation and selecting lh.aparc.annot makes tksurfer crash. Trying to convert annotations to labels using mri_annotation2label givies a bus error. What could be the problem? Running Max OSX 10.3.6.
thanks, Rutvik
% mri_annotation2label --subject 137 --hemi lh --outdir ./label --table $FREESURFER_HOME/Simple_surface_labels2002.txt
subject = 137 annotation = aparc hemi = lh outdir = (null) surface = white
Reading surface /usr/local/freesurfer/subjects/137/surf/lh.white Loading annotations from /usr/local/freesurfer/subjects/137/label/lh.aparc.annot reading colortable from annotation file... colortable with 85 entries read (originally /space/neo/5/recon/christophe/Simple_surface_labels2002.txt) reading colortable from annotation file... *** malloc_zone_calloc[22282]: arguments too large: 3221220448,520 CTABreadFrom: could not allocate -1073746848 bin table Cannot allocate memory Bus error % _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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