Dear experts, I cannot find a simple way to threshold my sig.mgh file from a functional group analysis (the file is in the fsaverage space). I would like to binarize it and save as a mask to use it with the --mask flag in the mri_glmfit command (to restrict other analyses to these parts of the cortex.
I will be very grateful for your help!
Cheers, Aga
Have you tried mri_binarize?
On Aug 30, 2011, at 8:53 AM, "Burzynska, Aga" burzynska@mpib-berlin.mpg.de wrote:
Dear experts, I cannot find a simple way to threshold my sig.mgh file from a functional group analysis (the file is in the fsaverage space). I would like to binarize it and save as a mask to use it with the --mask flag in the mri_glmfit command (to restrict other analyses to these parts of the cortex.
I will be very grateful for your help!
Cheers, Aga
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear all, I would like to display the ROI together with a statistical analysis within this ROI on the surface in tksurfer. However, I somehow cannot manage to view the two overlays at the same time. Is it because I use freesurfer version 5.0?
Thank you! Aga
Is the ROI a label?
On Aug 31, 2011, at 7:14 AM, "Burzynska, Aga" burzynska@mpib-berlin.mpg.de wrote:
Dear all, I would like to display the ROI together with a statistical analysis within this ROI on the surface in tksurfer. However, I somehow cannot manage to view the two overlays at the same time. Is it because I use freesurfer version 5.0?
Thank you! Aga
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Burzynska, Aga