Thanks, Tim, The lh.white.K and lh.white.H were created.

Thanks, Noam

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Tim Schäfer Sent: Friday, January 14, 2022 11:18 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all: error in creating rh.white.H

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Can you check whether any of the .H/.K files were created? They contain the per-vertex mean/Gaussian curvature for the respective surface, but what's more important is that they are symbolic links.

If you try to save recon-all output onto a drive formatted with a file system that does not support symbolic links (e.g., a shared network drive from a Windows file server), the files cannot be created, leading to that error. Could that be the case?

Best,

Tim

-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany

On 01/14/2022 5:02 PM Peled, Noam npeled@mgh.harvard.edu wrote:

Dear group A colleague of mine was trying to run recon-all on one of her patients and received an error message. After looking at the attached log, I'm not sure what is the source of the problem. The T1 looks quite good. She is using freesurfer-linux-centos8_x86_64-7.2.0-20210720-aa8f76b

Thanks! Noam

From: Gumenyuk, Valentina vgumenyuk@unmc.edu Sent: Friday, January 14, 2022 10:48 AM To: Peled, Noam NPELED@mgh.harvard.edu Subject: UNMC error

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freesurfer-linux-centos8_x86_64-7.2.0-20210720-aa8f76b

Thanks! -Valia

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