Hi Freesurfer Developers,
I have a manually edited segmentation of the brain cortical regions, and I want to map it to cortical parcellation labels on both white matter surface and pial surface. So I am wondering if there is any way in FreeSurfer that can map the segmentation volume to cortical labels. Something like the inverse of command mri_aparc2aseg.
Thanks!
All the Best, Hengda
Hi Hengda
yes, I think you can either use mri_vol2surf or mris_sample_parc to get your segmentation onto the surface
cheers Bruce On Mon, 13 Nov 2017, Hengda He wrote:
Hi Freesurfer Developers,
I have a manually edited segmentation of the brain cortical regions, and I want to map it to cortical parcellation labels on both white matter surface and pial surface. So I am wondering if there is any way in FreeSurfer that can map the segmentation volume to cortical labels. Something like the inverse of command mri_aparc2aseg.
Thanks!
All the Best, Hengda
try mris_seg2annot Run it with --help to get examples
On 11/13/17 3:06 PM, Hengda He wrote:
Hi Freesurfer Developers,
I have a manually edited segmentation of the brain cortical regions, and I want to map it to cortical parcellation labels on both white matter surface and pial surface. So I am wondering if there is any way in FreeSurfer that can map the segmentation volume to cortical labels. Something like the inverse of command mri_aparc2aseg.
Thanks!
All the Best, Hengda
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