External Email - Use Caution
Hello freesurfer experts,
I am aiming to view 3 to 8 different labels on one flattened surface patch created&viewed in tksurfer. Even if I can manually select the color of first label, the next ones end up sharing the same color and I cannot seem to change this from the interface and I didn't come across any command line options for this. Any advice on how to set these different colors? I see that freeview can handle this, but to my knowledge it cannot open flattened patches?
Any help would be deeply appreciated. Best Idil
External Email - Use Caution
I should also add that I cannot create an annot file as then all share multiple vertices.
Best Idil ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Yagmur Ozdemir 19 [yozdemir19@amherst.edu] Sent: Tuesday, June 19, 2018 9:13 PM To: Freesurfer support list [freesurfer@nmr.mgh.harvard.edu] Subject: [Freesurfer] differing display colors for 2+ labels in tksurfer
External Email - Use Caution
Hello freesurfer experts,
I am aiming to view 3 to 8 different labels on one flattened surface patch created&viewed in tksurfer. Even if I can manually select the color of first label, the next ones end up sharing the same color and I cannot seem to change this from the interface and I didn't come across any command line options for this. Any advice on how to set these different colors? I see that freeview can handle this, but to my knowledge it cannot open flattened patches?
Any help would be deeply appreciated. Best Idil
External Email - Use Caution
Idil,
From the command line with tksurfer open you can use the labl_set_color command - label is zero indexed based on the order that they were loaded.
See here for more details: https://surfer.nmr.mgh.harvard.edu/fswiki/TkSurferGuide/TkSurferScripting/Tk...
Cheers, Katie
On Tue, Jun 19, 2018 at 11:13 AM, Yagmur Ozdemir 19 yozdemir19@amherst.edu wrote:
External Email - Use CautionHello freesurfer experts,
I am aiming to view 3 to 8 different labels on one flattened surface patch created&viewed in tksurfer. Even if I can manually select the color of first label, the next ones end up sharing the same color and I cannot seem to change this from the interface and I didn't come across any command line options for this. Any advice on how to set these different colors? I see that freeview can handle this, but to my knowledge it cannot open flattened patches?
Any help would be deeply appreciated. Best Idil
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
External Email - Use Caution
Hello Katie,
I just checked it and it works well. Thank you for the help!
Best Idil ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Kathryn Devaney [kdevaney@bu.edu] Sent: Friday, June 22, 2018 2:02 AM To: Freesurfer support list Subject: Re: [Freesurfer] differing display colors for 2+ labels in tksurfer
External Email - Use Caution
Idil,
From the command line with tksurfer open you can use the labl_set_color command - label is zero indexed based on the order that they were loaded.
See here for more details: https://surfer.nmr.mgh.harvard.edu/fswiki/TkSurferGuide/TkSurferScripting/Tk...
Cheers, Katie
On Tue, Jun 19, 2018 at 11:13 AM, Yagmur Ozdemir 19 <yozdemir19@amherst.edumailto:yozdemir19@amherst.edu> wrote:
External Email - Use Caution
Hello freesurfer experts,
I am aiming to view 3 to 8 different labels on one flattened surface patch created&viewed in tksurfer. Even if I can manually select the color of first label, the next ones end up sharing the same color and I cannot seem to change this from the interface and I didn't come across any command line options for this. Any advice on how to set these different colors? I see that freeview can handle this, but to my knowledge it cannot open flattened patches?
Any help would be deeply appreciated. Best Idil
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu