try this version and let me know if it works. ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_convert If not, please send me the dicom via filedrop below

On 06/30/2016 05:45 AM, Leonardo Tozzi wrote:

To Whom it may concern,

I have tried to run the recon-all pipeline on some T1 data and have encountered the following error:

nifti1Read(): unsupported slice timing pattern 5

I have browsed the previous threads about it and it appears that it should have been fixed in version 5.3 but that is the version I run and the error is still there.

The data has been converted to NIFTI from DICOM using MRIcron and I don't have access to the original DICOMs.

I have seen that someone posted a modified version of nifti1Read() in the past and I was wondering if it was still available.

I am running Freesurfer 5.3.0 on MacOSX El Capitan 10.11.3.

Would you have any suggestions on how to proceed?

Thank you very much.

Yours faithfully,

Leonardo Tozzi, MD

PhD Student

Trinity College Institute of Neuroscience

College Green, Dublin 2

Ireland

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