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On 12/03/2018 06:12 AM, Anik Dar wrote:

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Dear All,

I have segmented the midbrain of each subjects into different subregions (peduncle, substantia nigra, red nucleus etc) using an atlas. I am trying to extract the volume of each region (the regions are labeled 101, 102, 103 etc) and also trying to extract the mean intensity from MPRAGE from each of these regions.

Is there a way to do this in freesurfer tools ? I realize that there is no color lut / index file associated with this atlas in freesurfer.

Please let me know.

Thank you,

Ani

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