Use the version from here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/mni152reg

Copy it into $FREESURFER_HOME/bin

doug

On 07/30/2014 05:14 PM, Fan, Qiuyun wrote:

Hi Freesurfer experts,

I was trying to align T1 image to MNI space by running 'mni152reg --s <subject>', and got the following error messages:

mkdir: cannot create directory `/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.5197': Permission denied

...

niiWrite(): error opening file /usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.6610/refvol.fslregister.nii

...

writing to /usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.5197/refvol.fslregister.nii... ERROR: failure writing /usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.5197/refvol.fslregister.nii

Could somebody give me some advice on how to deal with the error?

Thanks a lot!

Best,

Qiuyun

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