Dear all,
I would like to use Freesurfer's (5.1.0, 64bit) gui interfaces remotely to inspect Freesurfer's results produced on a server. I used two setups in an attempt to realize this:
1. PuTTy with X11 forwarding and Xming
2. TightVNC with VirtualGL
In both configurations, entering for example the command 'tkmedit' or 'qdec' (or in case 2 'vglrun cmd') results in a segmentation fault. In another thread I found the suggestion to 'setev QDEC_DONT_USE_HISTOGRAM_EDITOR 1', but unfortunately this doesn't help.
Do you have any ideas to fix this?
Thanks in advance,
Martijn
Hi Martijn,
Did you check http://surfer.nmr.mgh.harvard.edu/fswiki/RemoteAccess ?
The Additional Notes is particularly important as the vncserver.glx script will need to be properly configured for your site.
D On 2011 Oct 26, at 17:08 , Martijn Steenwijk wrote:
Dear all,
I would like to use Freesurfer's (5.1.0, 64bit) gui interfaces remotely to inspect Freesurfer's results produced on a server. I used two setups in an attempt to realize this:
PuTTy with X11 forwarding and XmingTightVNC with VirtualGLIn both configurations, entering for example the command 'tkmedit' or 'qdec' (or in case 2 'vglrun cmd') results in a segmentation fault. In another thread I found the suggestion to 'setev QDEC_DONT_USE_HISTOGRAM_EDITOR 1', but unfortunately this doesn't help.
Do you have any ideas to fix this?
Thanks in advance,
Martijn
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
No, unfortunately I did not come across this page. But I tried: downloaded the GLoverride directories, the vncserver.glx script, modified it to find Xvnc and started it. When I connect now with 'WORK' (to say so), my mouse is displayed as a cross (can move it) and the keyboard does not work. As a consequence I cannot start anything.
Thanks for your reply in advance,
Best, Martijn
-----Oorspronkelijk bericht----- Van: Dan G Wakeman [mailto:dgwakeman@gmail.com] Verzonden: woensdag 26 oktober 2011 23:49 Aan: Martijn Steenwijk CC: freesurfer@nmr.mgh.harvard.edu Onderwerp: Re: [Freesurfer] Remote tkmedit/qdec segmentation fault
Hi Martijn,
Did you check http://surfer.nmr.mgh.harvard.edu/fswiki/RemoteAccess ?
The Additional Notes is particularly important as the vncserver.glx script will need to be properly configured for your site.
D On 2011 Oct 26, at 17:08 , Martijn Steenwijk wrote:
Dear all,
I would like to use Freesurfer's (5.1.0, 64bit) gui interfaces remotely to inspect Freesurfer's results produced on a server. I used two setups in an attempt to realize this:
PuTTy with X11 forwarding and XmingTightVNC with VirtualGLIn both configurations, entering for example the command 'tkmedit' or
'qdec'
(or in case 2 'vglrun cmd') results in a segmentation fault. In another thread I found the suggestion to 'setev QDEC_DONT_USE_HISTOGRAM_EDITOR 1', but unfortunately this doesn't help.
Do you have any ideas to fix this?
Thanks in advance,
Martijn
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
Update: it seems that in KDE-mode the keyboard works (modified the vncserver.glx script to do so). Mouse also moves, but clicks are not recognized. I was able to start a terminal and see whether I could start qdec. Unfortunately, the same segmentation error is shown.
-----Oorspronkelijk bericht----- Van: Dan G Wakeman [mailto:dgwakeman@gmail.com] Verzonden: woensdag 26 oktober 2011 23:49 Aan: Martijn Steenwijk CC: freesurfer@nmr.mgh.harvard.edu Onderwerp: Re: [Freesurfer] Remote tkmedit/qdec segmentation fault
Hi Martijn,
Did you check http://surfer.nmr.mgh.harvard.edu/fswiki/RemoteAccess ?
The Additional Notes is particularly important as the vncserver.glx script will need to be properly configured for your site.
D On 2011 Oct 26, at 17:08 , Martijn Steenwijk wrote:
Dear all,
I would like to use Freesurfer's (5.1.0, 64bit) gui interfaces remotely to inspect Freesurfer's results produced on a server. I used two setups in an attempt to realize this:
PuTTy with X11 forwarding and XmingTightVNC with VirtualGLIn both configurations, entering for example the command 'tkmedit' or
'qdec'
(or in case 2 'vglrun cmd') results in a segmentation fault. In another thread I found the suggestion to 'setev QDEC_DONT_USE_HISTOGRAM_EDITOR 1', but unfortunately this doesn't help.
Do you have any ideas to fix this?
Thanks in advance,
Martijn
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Dan G Wakeman -
Martijn Steenwijk