External Email - Use Caution
Hello, Fs I want to template some subject to fsaverage5, but now I meet some problems FreeSurfer version: Fs6 Download the files: HLN-12-2.tar.gz OASIS-TRT-20-1.tar.gz Twins-2-1.tar.gz Twins-2-2.tar.gz(https://secure-web.cisco.com/1yywjdkihIUyeuY7hFipb87XklaxLwbZLe2QL2---s_fK-n...)
Register the following 5 files into the fsaverage5 space: lh.area lh.jacobian_white lh.volume lh.labels.DKT31.manual.annot
The error message: HLN-12-2: lh.area lh.volume lh.jacobian_white can't match the surface (148208,146833) OASIS-20-1: lh.labels.DKT31.manual.annot here is a problem with the registration of the .annot file, can't allocate memory Twins-2-1/Twins-2-2: File missing: lh.area lh.volume lh.jacobian_white
template to fsaverage5 space command: mri_surf2surf example 1: mri_surf2surf --srcsubject Afterthought-1 --sval thickness --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/Afterthought-1-target/thickness --trg_type curv --hemi rh
example 2: mri_surf2surf --srcsubject OASIS-TRT-20-1 --trgsubject fsaverage5 --hemi lh --sval-annot /home/tj/application/freesurfer/subjects/OASIS-TRT-20-1/label/lh.labels.DKT31.manual.annot --tval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/lh.labels.DKT31.manual.annot
Do you know how to solve these problem? Could you please download the four folder, and template the four file to fsaverage5 space? Then send the peocessed file to me. Thank you very much!
从QQ邮箱发来的超大附件
Description.txt (1.2K, 2021年03月04日 10:52 到期)进入下载页面:http://secure-web.cisco.com/1jd2liRa00yonNeFyG9AZ2bcluJP4-ULFyYofPB6dk8P4W-b...
HLN-12-2.tar.gz (313.74M, 2021年04月03日 10:45 到期)进入下载页面:http://secure-web.cisco.com/1J-fWxcdcF6bvpmsz6UIpIJxIGomCAdLkeFooypdsfGsU1DM...
OASIS-TRT-20-1.tar.gz (317.69M, 2021年04月03日 10:53 到期)进入下载页面:http://secure-web.cisco.com/11SlUOJyt6MBMrV6J67jeFNISMvisa-dACbQNXHClGgk9Roc...
Twins-2-1.tar.gz (227.10M, 2021年04月03日 11:02 到期)进入下载页面:http://secure-web.cisco.com/1EXcLgILy53kxZ_CKjJSDkth4O91WhxEdozgc9j6QloXpB5e...
Twins-2-2.tar.gz (265.12M, 2021年04月03日 11:07 到期)进入下载页面:http://secure-web.cisco.com/1R9eFYoZnJyEzQ0wpWbZLeO41mITjC214u7P89KowtZU06Tc...
Can you give the command line that is failing and the terminal output?
On 3/4/2021 12:53 AM, 1248742467 wrote:
External Email - Use Caution
Hello, Fs I want to template some subject to fsaverage5, but now I meet some problems FreeSurfer version: Fs6 Download the files: HLN-12-2.tar.gz OASIS-TRT-20-1.tar.gz Twins-2-1.tar.gz Twins-2-2.tar.gz(https://osf.io/wzqmg/)
Register the following 5 files into the fsaverage5 space: lh.area lh.jacobian_white lh.volume lh.labels.DKT31.manual.annot
The error message: HLN-12-2: lh.area lh.volume lh.jacobian_white can't match the surface (148208,146833) OASIS-20-1: lh.labels.DKT31.manual.annot here is a problem with the registration of the .annot file, can't allocate memory Twins-2-1/Twins-2-2: File missing: lh.area lh.volume lh.jacobian_white
template to fsaverage5 space command: mri_surf2surf example 1: mri_surf2surf --srcsubject Afterthought-1 --sval thickness --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/Afterthought-1-target/thickness --trg_type curv --hemi rh
example 2: mri_surf2surf --srcsubject OASIS-TRT-20-1 --trgsubject fsaverage5 --hemi lh --sval-annot /home/tj/application/freesurfer/subjects/OASIS-TRT-20-1/label/lh.labels.DKT31.manual.annot --tval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/lh.labels.DKT31.manual.annot
Do you know how to solve these problem? Could you please download the four folder, and template the four file to fsaverage5 space? Then send the peocessed file to me. Thank you very much!
*从QQ邮箱发来的超大附件* http://secure-web.cisco.com/1jd2liRa00yonNeFyG9AZ2bcluJP4-ULFyYofPB6dk8P4W-b6OLQQekGtbJXJPxTd2zPkefh2rE317c416UX8ieZx0pv84HR-hrJVl6HPUYhClxDig8qjhAn34zmAC8SO-CtwAloSmB1Qgtslo4qcXD0Mm61dspQOjc9N8e4hEbSK_SCdsc5GKGkRqfu5tZhvqvA9i0SQf-zpPILcQ15_r89NcYIJEOu_CZ4CYrtRuQvF8QtDMJi5Wp18ljaIso0o_fFlWrbb4ddj4gDiLftGfQ/http%3A%2F%2Fmail.qq.com%2Fcgi-bin%2FftnExs_download%3Ft%3Dexs_ftn_download%26k%3D2265303515cb9e9925295e7f103053495506090c075250034b550006011d550407531d545452024b5e57030600555453005d0857363f6122031653475f40150f090b1e414e44615b%26code%3Dfe0560af Description.txt 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http://secure-web.cisco.com/1J-fWxcdcF6bvpmsz6UIpIJxIGomCAdLkeFooypdsfGsU1DMLpD1LnmGwGp_hIpTyhMAHjn2XXACOXovtPzUErGxPUfGHJDMIAWHvtCEbLrtwzObmlwyB0TjVZuQsT9bBYFmxf349yEFO5rNYN7twc20iORYAIyKbA5ol6qabfWoRl_HXT0AuUVzRv0TpAmwyKjmbOwY3jCUJXubRw4R0WGhZLuosRT2wFKtB5NLJZvgMRhu7SJl5ZdJ--lBPYdStYvNiKc2qt_bDEPpoXVKyCw/http%3A%2F%2Fmail.qq.com%2Fcgi-bin%2FftnExs_download%3Ft%3Dexs_ftn_download%26k%3D753531361e0e028972795f7c1534544a08500653045051571c0408020b19525601541c0e07050448500255570205075604500607333b662d7d7b1c070119544b45544318544e6658%26code%3D151634fe HLN-12-2.tar.gz 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