Also see https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat

On 10/27/2022 12:00 PM, Wighton, Paul wrote:

Hi Padma,

You can use the --like flag of mri_convert to convert the output of the skull stripping back to the dimensions of the original file https://surfer.nmr.mgh.harvard.edu/fswiki/mri_convert

e.g

mri_convert --like input-to-skullstrip.mgz output-from-skullstrip.mgz skullstripped_orig_dims.mgz

-Paul

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*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of priya padma priya@phenomx.ai *Sent:* Thursday, October 27, 2022 3:05 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] change in mask size

External Email - Use Caution

Dear Team,

I tried using freesurfer for skull stripping and I got results all of size 256X256X256 but the original data size is different, it's 512X512X537.

Is there any way to bring back the original size in freesurfer? Any help would be appreciated.

Thank you

-- Best Regards Padma Priya /AI Developer / / / /PhenoMx, Inc./ /priya@phenomx.ai | (+82)10-5405-2685/ / /

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