Hi Steven, PNM is an FSL tool, not freesurfer, but if you’re having remote-access permissions issues it might be best to contact the martinos help desk.

Are you setting “output basename” to a writable directory?

best Andrew

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Meisler, Steven Lee" SMEISLER@mgh.harvard.edu Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Wednesday, December 19, 2018 at 4:35 PM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] PNM Gui

Hello Freesurfer developers,

I just wanted to kindly follow up to my previous message. I'm working from a remote Martinos linux server, so I've found that sometimes I don't have proper permissions to run important scripts, such as the physiological noise modeling processing pipeline that I referenced in my first message. Thank you in advance for your assistance.

Best,

Steven

________________________________ From: Meisler, Steven Lee Sent: Tuesday, December 4, 2018 9:38:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: PNM Gui

Hello FS team,

When I try to run Physiological Noise Modeling through the PNM GUI, I get an error message saying that I don't have permission to run the script "_pnm_stage3." Do you know how I may remedy this?

Thanks,

Steven

--------------

Steven L. Meisler, M.S.E.

Clinical Research Coordinator II

Laboratory for NeuroImaging of Coma and Consciousnesshttps://www.massgeneral.org/neurology/research/researchlab.aspx?id=1605

175 Cambridge Street, Suite 300

Boston, MA 02114

smeisler@mgh.harvard.edumailto:smeisler@mgh.harvard.edu | (617)-726-1884

https://www.linkedin.com/in/steven-meisler

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