External Email - Use Caution
Hello,
We are trying to run two subjects through recon-all. The kicker is that these two have very large ventricles and we have been stuck at mris_fix_topology (the script reports about 100-ish defects for each). We use HPC to run the analyses but even with a walltime of 96 hours each, both subjects were unable to be finished within that time frame. My question is that is there any way to improve mris_fix_topology runtime?
Subject 1:
Subject 2:
Thank you for your help.
Best,
Khoi
Hi Khoi
I would recommend trying out version 6 and using the bigventricles flag. It works pretty well
cheers Bruce On Thu, 26 Jul 2018, Khoi Mai wrote:
External Email - Use Caution
Hello, We are trying to run two subjects through recon-all. The kicker is that these two have very large ventricles and we have been stuck at mris_fix_topology (the script reports about 100-ish defects for each). We use HPC to run the analyses but even with a walltime of 96 hours each, both subjects were unable to be finished within that time frame. My question is that is there any way to improve mris_fix_topology runtime?
Subject 1: [IMAGE]
Subject 2: [IMAGE]
Thank you for your help.
Best,
Khoi
External Email - Use Caution
Hi Bruce,
Thank you for your reply. I will try and let you know.
Best,
Khoi
On Thu, Jul 26, 2018 at 4:29 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Khoi
I would recommend trying out version 6 and using the bigventricles flag. It works pretty well
cheers Bruce On Thu, 26 Jul 2018, Khoi Mai wrote:
External Email - Use CautionHello, We are trying to run two subjects through recon-all. The kicker is that these two have very large ventricles and we have been stuck at mris_fix_topology (the script reports about 100-ish defects for each). We use HPC to run the analyses but even with a walltime of 96 hours each, both subjects were unable to be finished within that time frame. My question is that is there any way to improve mris_fix_topology runtime?
Subject 1: [IMAGE]
Subject 2: [IMAGE]
Thank you for your help.
Best,
Khoi
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