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| | Dear freesurfer experts, I am using freesurfer to analyze my PET data according to the tutorial online. It works pretty well and I write the values of the results of each region to the template with Matlab (file attached here entitled "lh.subj1.mgz"). However, when I try to open it with freeview, the image looks quite strange ('Picture_1') but it works with tksurfer (Picture_2). Does any one know what is wrong with this? Did I plot the result in a wrong way?
Thanks very much Shize
--
Shize Jiang Fudan University, Department of neurosurgery, Huashan Hospital, Shanghai Medical College Shanghai,200032,P.R.China Mobile: (86)18317079839 E-Mail: sjiang13@fudan.edu.cn
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What is your freeview command? Is there any message shown in the terminal?
Ruopeng
On Nov 21, 2018, at 5:07 PM, 姜时泽 jiangshize1990@163.com wrote:
Dear freesurfer experts, I am using freesurfer to analyze my PET data according to the tutorial online. It works pretty well and I write the values of the results of each region to the template with Matlab (file attached here entitled "lh.subj1.mgz"). However, when I try to open it with freeview, the image looks quite strange ('Picture_1') but it works with tksurfer (Picture_2). Does any one know what is wrong with this? Did I plot the result in a wrong way?
Thanks very much Shize
-- Shize Jiang Fudan University, Department of neurosurgery, Huashan Hospital, Shanghai Medical College Shanghai,200032,P.R.China Mobile: (86)18317079839 E-Mail: sjiang13@fudan.edu.cn mailto:sjiang13@fudan.edu.cn
<lh.subj1.mgz><Picture_2><Picture_1.png>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Ruopeng, my freeview command for this result is 'freeview -v lh.subj1.mgz'. I tried 'freeview -f lh.subj1.mgz' also, the message with in terminal said 'freadFloat: fread failed' Thank you
Shize
At 2018-11-22 06:38:29, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote: What is your freeview command? Is there any message shown in the terminal?
Ruopeng
On Nov 21, 2018, at 5:07 PM, 姜时泽 jiangshize1990@163.com wrote:
| | Dear freesurfer experts, I am using freesurfer to analyze my PET data according to the tutorial online. It works pretty well and I write the values of the results of each region to the template with Matlab (file attached here entitled "lh.subj1.mgz"). However, when I try to open it with freeview, the image looks quite strange ('Picture_1') but it works with tksurfer (Picture_2). Does any one know what is wrong with this? Did I plot the result in a wrong way?
Thanks very much Shize
--
Shize Jiang Fudan University, Department of neurosurgery, Huashan Hospital, Shanghai Medical College Shanghai,200032,P.R.China Mobile: (86)18317079839 E-Mail: sjiang13@fudan.edu.cn
| | | |
<lh.subj1.mgz><Picture_2><Picture_1.png>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Shize
is lh.subj1.mgz a surface overlay? If so you display it as:
freeview -f lh.inflated:overlay=lh.subj1.mgz
cheers Bruce On Thu, 22 Nov 2018, 姜时泽 wrote:
External Email - Use Caution
Hi Ruopeng, my freeview command for this result is 'freeview -v lh.subj1.mgz'. I tried 'freeview -f lh.subj1.mgz' also, the message with in terminal said 'freadFloat: fread failed' Thank you Shize
At 2018-11-22 06:38:29, "Ruopeng Wang" rpwang@nmr.mgh.harvard.edu wrote: What is your freeview command? Is there any message shown in the terminal? Ruopeng
On Nov 21, 2018, at 5:07 PM, 姜时泽 <jiangshize1990@163.com> wrote:Dear freesurfer experts, I am using freesurfer to analyze my PET data according to the tutorial online. It works pretty well and I write the values of the results of each region to the template with Matlab (file attached here entitled "lh.subj1.mgz"). However, when I try to open it with freeview, the image looks quite strange ('Picture_1') but it works with tksurfer (Picture_2). Does any one know what is wrong with this? Did I plot the result in a wrong way?
Thanks very much Shize
--
Shize Jiang Fudan University, Department of neurosurgery, Huashan Hospital, Shanghai Medical College Shanghai,200032,P.R.China Mobile: (86)18317079839 E-Mail: sjiang13@fudan.edu.cn
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