Dear FS experts, I completed mri_surf2vol converting lh.gender_age.thickness.10.mgh into test.nii based on the fsaverage template. I want to know what space for the two files(*.mgh and *.nii) respectively? Thanks. All the best. Rujing Zha
2014-03-27
charujing123
Hi Rujing
we need your entire command line to know cheers Bruce On Thu, 27 Mar 2014, charujing123 wrote:
Dear FS experts, I completed mri_surf2vol converting lh.gender_age.thickness.10.mgh into test.nii based on the fsaverage template. I want to know what space for the two files(*.mgh and *.nii) respectively? Thanks. All the best. Rujing Zha 2014-03-27
charujing123
Hi Bruce It's mri_surf2vol --surfval ./lh.gender_age.thickness.10.mgh --hemi rh --fillribbon --subject fsaverage --identity fsaverage --template $SUBJECTS_DIR/fsaverage/mri/orig.mgz --o test.nii Thanks All the best. Rujing Zha 2014-03-27
charujing123
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2014-03-27 20:32 主题：Re: [Freesurfer] space conversion in the mri_surf2vol 收件人："Freesurfer support list"freesurfer@nmr.mgh.harvard.edu 抄送：
Hi Rujing
we need your entire command line to know cheers Bruce On Thu, 27 Mar 2014, charujing123 wrote:
Dear FS experts, I completed mri_surf2vol converting lh.gender_age.thickness.10.mgh into test.nii based on the fsaverage template. I want to know what space for the two files(*.mgh and *.nii) respectively? Thanks. All the best. Rujing Zha
2014-03-27
charujing123
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The mgh file is a surface overlay, not a 3d volume. The nii will be in MNI305 space
On 03/27/2014 08:36 AM, charujing123 wrote:
Hi Bruce It's mri_surf2vol --surfval ./lh.gender_age.thickness.10.mgh --hemi rh --fillribbon --subject fsaverage --identity fsaverage --template $SUBJECTS_DIR/fsaverage/mri/orig.mgz --o test.nii Thanks All the best. Rujing Zha 2014-03-27
charujing123
*发件人：*Bruce Fischl fischl@nmr.mgh.harvard.edu *发送时间：*2014-03-27 20:32 *主题：*Re: [Freesurfer] space conversion in the mri_surf2vol *收件人：*"Freesurfer support list"freesurfer@nmr.mgh.harvard.edu *抄送：* Hi Rujing we need your entire command line to know cheers Bruce On Thu, 27 Mar 2014, charujing123 wrote:
Dear FS experts, I completed mri_surf2vol converting lh.gender_age.thickness.10.mgh into test.nii based on the fsaverage template. I want to know what space for the two files(*.mgh and *.nii)
respectively?
Thanks. All the best. Rujing Zha
2014-03-27
charujing123
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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