Dear FreeSurfer Experts,
What is the best way of creating surfaces approximating layer IV of the cortex or the 'mid' surface (I.e. Surface between grey and white matter).
Thank you very much for your help.
Regards, Christine
Hi Christine
we use mris_expand for this. E.g. from the surf dir
mris_expand -thickness lh.white 0.5 lh.mid
cheers Bruce
On Thu, 14 Feb 2013, Ecker, Christine wrote:
Dear FreeSurfer Experts,
What is the best way of creating surfaces approximating layer IV of the cortex or the 'mid' surface (I.e. Surface between grey and white matter).
Thank you very much for your help.
Regards, Christine
Hi Christine, If you cd to the subject directory you can locate the ?h.white surface and use mris_expand command to do this. Hth, Shantanu
On Thu, February 14, 2013 5:39 am, Ecker, Christine wrote:
Dear FreeSurfer Experts,
What is the best way of creating surfaces approximating layer IV of the
cortex or the 'mid' surface (I.e. Surface between grey and white matter).
Thank you very much for your help.
Regards, Christine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
sorry the files are in the surf directory
On Thu, February 14, 2013 9:53 am, Shantanu Ghosh wrote:
Hi Christine, If you cd to the subject directory you can locate the ?h.white surface and use mris_expand command to do this. Hth, Shantanu
On Thu, February 14, 2013 5:39 am, Ecker, Christine wrote:
Dear FreeSurfer Experts,
What is the best way of creating surfaces approximating layer IV of the
cortex or the 'mid' surface (I.e. Surface between grey and white matter).
Thank you very much for your help.
Regards, Christine
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Ecker, Christine -
Shantanu Ghosh