Thanks Donna, Krish & Bruce!

Your help was invaluable.

Thanks again, Navaneethan

On Mon, May 19, 2008 at 3:34 PM, Krish Subramaniam < krish@nmr.mgh.harvard.edu> wrote:

Navaneethan,

To answer #2, .mgz is indeed gzipped .mgh but gunzip probably doesn't recognize the suffix.

cp foo.mgz foo.mgh.gz gunzip foo.mgh.gz

should work.

-Krish

On May 19, 2008, at 3:46 PM, Navaneethan Santhanam wrote:

...

Hi Freesurfer gurus & experts,

I'm trying to port Freesurfer data into an Afni-compatible format. I have some questions regarding this process -

1. I came up with the idea of converting Freesurfer data to the Analyze

format (from the PDF on the FSWiki), and then to Afni. I'm not exactly sure how to create Analyze's .img files, as there doesn't seem to be any documentation on this. Is there a way to do this, or am I heading down an overly complicated route? Is there a better way to convert Freesurfer data into Afni's format?

2. Given .mgz files, I tried gunzip-ing them, but received an error saying

that the extension was an unknown format. How do I unzip these files?

I'd really appreciate any help you can give me.

Thanks, Navaneethan

-- Navaneethan Santhanam Department of Computer Science University of Illinois at Urbana-Champaign Contact - 1-217-714-6954 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer