Hi all, I'm trying to run some 3T data through freesurfer and encouter a consistent problem in the cuneus/occiptal lobes where the pial surface fails to extend the the grey/CSF boundary and instead follows the white surface. I have attached an example. This problem happens in the same area across a substantial proportion of my images. I've tried control points, but they don't seem to help. Any suggestions would be greatly appreciated. Thanks, Alex
Hi Alex,
I see what you mean, but don't think I can diagnose it from one slice. Can you drop the gzipped tarball of the subject on our website?
Bruce On Fri, 13 Jul 2007, Alexander Fornito wrote:
Hi all, I'm trying to run some 3T data through freesurfer and encouter a consistent problem in the cuneus/occiptal lobes where the pial surface fails to extend the the grey/CSF boundary and instead follows the white surface. I have attached an example. This problem happens in the same area across a substantial proportion of my images. I've tried control points, but they don't seem to help. Any suggestions would be greatly appreciated. Thanks, Alex
freesurfer@nmr.mgh.harvard.edu