That seems to now work with those changes.

Thanks so much to Adam and Doug!

Sandra

Yes, that should work.

doug

Adam Nitenson wrote:

...

Hi Sandra,

I just had this same problem about a week ago. The solution which

worked for me was adding the following line of text into the startup.m file in your matlab folder:

path(path,'/usr/pubsw/common/spm/spm5');

I'm not sure it matter exactly where you put it. I put mine in the last row in the FreeSurfer FAST section, under the line beginning with "clear".

Hope that helps!

-Adam

...

Hello,

When running spmregister-sess (standard environment was sourced) I encountered this error:

ERROR: matlab exited with errors ERROR: cannot find spm_coreg.m. Make sure that the SPM package is in your matlab path (check ~/matlab/startup) ERROR: spm_coreg

ERROR: spmregister failed __________________________________________________________

Our information:

FREESURFER_HOME: /usr/local/freesurfer/stable4

Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.5.0-20100311

RedHat release: CentOS release 5.3 (Final)

Kernel info: Linux 2.6.18-128.7.1.el5 x86_64

NMR Center info (/space/freesurfer exists):

machine: purkinje

SUBJECTS_DIR: /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons

PWD: /cluster/ablood/1/DMRF_ASL

ssh purkinje setenv SUBJECTS_DIR /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons cd /cluster/ablood/1/DMRF_ASL __________________________________________________________________

We appreciate any help you can give us!!

Thanks,

Sandra Mood and Motor Control Laboratory Athinoula Martinos Center for Biomedical Imaging Massachusetts General Hospital 120 6th St. Charlestown, MA 02129 Tel: 617-643-6245 Fax: 617-726-1351 Email: swoodman1@partners.org

---

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Adam Nitenson, B.S. Brain Genomics Lab Massachusetts General Hospital _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html