Hi
I editted the wm.mgz and aseg.mgz files... Which recon-all command must I use to continue the processing ?...
Sincerely,
Gonzalo Rojas Costa
-make all should work.
cheers Bruce On Mon, 25 Jul 2011, Gonzalo Rojas Costa wrote:
Hi
I editted the wm.mgz and aseg.mgz files... Which recon-all command must I use to continue the processing ?...
Sincerely,
Gonzalo Rojas Costa _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Bruce:
Maybe I didn't explain clearly my question... I did a complete processing of a patient, then I must edit wm.mgz and aseg.mgz because I found some segmentation errors... Which recon-all command must I run to reprocess the study to use the edited files (wm.mgz and aseg.mgz) ?...
Sincerely,
Gonzalo Rojas Costa
El 25-07-2011 18:51, Bruce Fischl escribió:
-make all should work.
cheers Bruce On Mon, 25 Jul 2011, Gonzalo Rojas Costa wrote:
Hi
I editted the wm.mgz and aseg.mgz files... Which recon-all command must I use to continue the processing ?...
Sincerely,
Gonzalo Rojas Costa _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Gonzalo,
Nick can correct me if I'm wrong, but the intent of -make all is to detect which steps need to be rerun based on file timestamps. All edits should also be detected and kept, so it should do the right thing (right Nick?)
cheers Bruce
On Mon, 25 Jul 2011, Gonzalo Rojas Costa wrote:
Hi Bruce:
Maybe I didn't explain clearly my question... I did a complete processing of a patient, then I must edit wm.mgz and aseg.mgz because I found some segmentation errors... Which recon-all command must I run to reprocess the study to use the edited files (wm.mgz and aseg.mgz) ?...
Sincerely,
Gonzalo Rojas Costa
El 25-07-2011 18:51, Bruce Fischl escribió:
-make all should work.
cheers Bruce On Mon, 25 Jul 2011, Gonzalo Rojas Costa wrote:
Hi
I editted the wm.mgz and aseg.mgz files... Which recon-all command must I use to continue the processing ?...
Sincerely,
Gonzalo Rojas Costa _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Bruce:
I ran with -make all, and I get good results... It seems that freesurfer uses the wm.mgz and aseg.mgz editions that I did...
Sincerely,
Gonzalo Rojas Costa
El 27-07-2011 11:48, Bruce Fischl escribió:
Hi Gonzalo,
Nick can correct me if I'm wrong, but the intent of -make all is to detect which steps need to be rerun based on file timestamps. All edits should also be detected and kept, so it should do the right thing (right Nick?)
cheers Bruce
Great Bruce
On Jul 27, 2011, at 11:59 AM, Gonzalo Rojas Costa gonzalo.rojas.costa@gmail.com wrote:
Hi Bruce:
I ran with -make all, and I get good results... It seems that freesurfer uses the wm.mgz and aseg.mgz editions that I did...
Sincerely,
Gonzalo Rojas Costa
El 27-07-2011 11:48, Bruce Fischl escribió:
Hi Gonzalo,
Nick can correct me if I'm wrong, but the intent of -make all is to detect which steps need to be rerun based on file timestamps. All edits should also be detected and kept, so it should do the right thing (right Nick?)
cheers Bruce
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Gonzalo Rojas Costa