Hi Neda, Your terminal is probably setup to use the bash environment by default. If you type tcsh, then you'll be using C shell and that command should then work. I see that this is not on the install page, but on the setup/config page there is a note about it. There are also alternate commands to use for bash if you want on that page as well. -Louis

On Wed, 22 Jan 2014, Neda Mohammadi wrote:

Hi dear Louis, yes I read this link https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall%C2%A0but when I write this command setenv FREESURFER_HOME /usr/local/freesurfer I see this message: bash: setenv: command not found

best, Neda

On Wed, Jan 22, 2014 at 9:06 PM, Louis Nicholas Vinke vinke@nmr.mgh.harvard.edu wrote: Hi Neda, Have you read over the linux install directions in the link below?  You will need to register and get a license file.  After that you should look over the setup and config instructions.

  https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall
  https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration

  -Louis

  On Wed, 22 Jan 2014, Neda Mohammadi wrote:

        Hi dear all,
        I want to use freesurfer for tractography by FSL.
        I downloaded freesurfer-linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz and I
        want to install it but I don't know how.

        Please help me.
        Thanks in advance,
        Neda

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