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Hi,
recon-all does not seem to produce a map of CSF. My research is especially interested in how CSF is distributed. Is there a way to get this?
Michael McLaughlin,
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You can try mri_binarize --i aseg.mgz --csf --o csf.mgz to get a binary map Note that the aseg does not have sulcal CSF labeled. But you can get that with something like samseg --i orig.mgz --o samseg Then run mri_binarize on the seg.mgz file
On 8/27/2023 3:05 AM, Michael Mc Laughlin wrote:
External Email - Use Caution
Hi,
recon-all does not seem to produce a map of CSF. My research is especially interested in how CSF is distributed. Is there a way to get this?
Michael McLaughlin,
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1iJ4dFb3UtlL0gnZ74BTRmuoE4genf7E4a7Aboka6nBaMrl...
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Very interesting. Thanks.
On Mon, Aug 28, 2023 at 2:52 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
External Email - Use CautionYou can try mri_binarize --i aseg.mgz --csf --o csf.mgz to get a binary map Note that the aseg does not have sulcal CSF labeled. But you can get that with something like samseg --i orig.mgz --o samseg Then run mri_binarize on the seg.mgz file
On 8/27/2023 3:05 AM, Michael Mc Laughlin wrote:
External Email - Use CautionHi,
recon-all does not seem to produce a map of CSF. My research is especially interested in how CSF is distributed. Is there a way to get this?
Michael McLaughlin,
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Michael Mc Laughlin