Hi Ngoaka no, you don't need to set the origin of the image. Just point recon-all at a single slice from the correct dicom series (of a highres T1-weighted scan) with the
-i <full path and file name of dicom slice> -all -s <subject id that you pick>
and you should be good to go
cheers Bruce
On Tue, 4 Nov 2014, CHONNIKAN JONGKREANGKRAI wrote:
Dear all,
I'm new on FreeSurfer. I want to calculate cortical thickness, hippocampus volume from MRI images (obtained from ADNI).
After installation, I tried recon-all. >> Only this process, can I obtain cortical thickness and hippocampus volume?
And someone told me that I have to set origin of the image of each case using SPM program.
I want to know that is it necessary?
Thank you for your kind attention
Best Regards,
Ngoak
Dear Bruce,
Thank you for quick answer. I can use .nii file instead of dicom, right?
Best Regards, Ngoak
On 4 พ.ย. 2557, at 22:06, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ngoaka no, you don't need to set the origin of the image. Just point recon-all at a single slice from the correct dicom series (of a highres T1-weighted scan) with the
-i <full path and file name of dicom slice> -all -s <subject id that you pick>
and you should be good to go
cheers Bruce
On Tue, 4 Nov 2014, CHONNIKAN JONGKREANGKRAI wrote:
Dear all, I'm new on FreeSurfer. I want to calculate cortical thickness, hippocampus volume from MRI images (obtained from ADNI). After installation, I tried recon-all. >> Only this process, can I obtain cortical thickness and hippocampus volume? And someone told me that I have to set origin of the image of each case using SPM program. I want to know that is it necessary? Thank you for your kind attention Best Regards, Ngoak
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yes, that's fine On Tue, 4 Nov 2014, CHONNIKAN JONGKREANGKRAI wrote:
Dear Bruce,
Thank you for quick answer. I can use .nii file instead of dicom, right?
Best Regards, Ngoak
On 4 พ.ย. 2557, at 22:06, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ngoaka no, you don't need to set the origin of the image. Just point recon-all at a single slice from the correct dicom series (of a highres T1-weighted scan) with the
-i <full path and file name of dicom slice> -all -s <subject id that you pick>
and you should be good to go
cheers Bruce
On Tue, 4 Nov 2014, CHONNIKAN JONGKREANGKRAI wrote:
Dear all, I'm new on FreeSurfer. I want to calculate cortical thickness, hippocampus volume from MRI images (obtained from ADNI). After installation, I tried recon-all. >> Only this process, can I obtain cortical thickness and hippocampus volume? And someone told me that I have to set origin of the image of each case using SPM program. I want to know that is it necessary? Thank you for your kind attention Best Regards, Ngoak
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
CHONNIKAN JONGKREANGKRAI