Hi Judith,

I think something like:

recon-all -s $subject -cortparc2 -parcstats2

should do it (but check the recon-all help).

cheers Bruce

On Mon, 25 Jan 2010, Judith Segall wrote:

Hi Freesurfer community.

We have run several hundred subjects though freesurfer using version 4.2 with additional bug patches for the aparcstats2table bug. We would like to update our stats from aparc.a2005s to the aparc.a2009s atlas.

Is this possible? If so, what is the appropriate command? Is this methodologically sound? Aside from longitudinal analysis streams, I am not seeing any large differences between 4.2 and 4.5, but wanted to make sure.

Thanks for help on this.

• Judith S

Mind Research Network