Kazu,

It looks like the -noaseg option does make use of norm.mgz (a change that seems to have occurred since the option was created and tested).

As a work-around, you should be able to do this:

ln -s brainmask.mgz norm.mgz

and then run the -autorecon2 -noaseg flags. brainmask.mgz is a close enough stand-in for norm.mgz.

Nick

On Sun, 2007-01-21 at 17:45 -0500, Tanji, Kazuyo (NIH/NIMH) [F] wrote:

Hi,

I have a question on how to use -noaseg option.

I tried a script: recon-all -autorecon2 -noaseg -subjid xxx.

This seems to skip several steps of autorecon2 and start from 'mri_normalize' . This results in an error because norm.mgz is not existing.

Could you suggest better ways to use -noaseg?

Thanks, Kazu

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