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Do we have an editing criteria for hippocampal inclusion/exclusion error in recon_all and in subfields?

Best, Saurabh ________________________________ From: Jindal, Saurabh jindals@wustl.edu Sent: Thursday, April 22, 2021 2:03 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: Hippocampal Subfields

Okay, Thank you very much Philipp.

Best, Saurabh

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Saemann, Philipp saemann@psych.mpg.de Sent: Thursday, April 22, 2021 2:01 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Hippocampal Subfields

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Hi Saurabh,

you have to run (and QC) recon-all before,

Best,

Philipp

________________________________ Von: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu im Auftrag von Jindal, Saurabh jindals@wustl.edu Gesendet: Donnerstag, 22. April 2021 20:55 An: freesurfer@nmr.mgh.harvard.edu Betreff: [Freesurfer] Hippocampal Subfields

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Hi experts,

I am focusing on hippocampus for my work using subfield analysis on freesurfer 7.1. Is there is way to run the container only for subfields or do we have to run recon_all on the subject first always? Thanks.

Saurabh Postdoc Research Fellow

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