You need to add -all to that command (will take 6-8 hours). In the end, look in the subjectname/stats folder for lots of stats

On 2/25/2021 3:29 AM, Rosalia Dacosta Aguayo wrote:

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Dear all,

I would like to parcellate the brain and calculate the volumes, but I am unsure about the command lines I should use.

I thought about first doing this: recon-all -subject subjectname -i /path/..../Artico1.nii.gz -all. Should I need any other argument here to get the stats?

But then, I am unsure about the next command I should use, which arguments and the image from stats I should use to do the stats. Also, which smoothing should I use?

Best, Rosalia

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