It appears to be working now. Thank you very much.

-Ariana

On Thu, Apr 27, 2017 at 1:36 PM, Z K zkaufman@nmr.mgh.harvard.edu wrote:

I'm not certain but I suspect the "@" in the output file path is causing a problem:

/home/astickel@mbb.arizona.edu/Freesurfer_test/e6141_rawT1/e6141_2/mri/orig/001.mgz

Can you try avoiding odd path names like that? Maybe just use /tmp?

On 04/27/2017 04:28 PM, Ariana Marie Stickel wrote:

...

Dear Freesurfer Developers,

I am attempting recon-all on one subject. I immediately get the following error: mri_convert.bin: can't determine type of output volume

See recon-all.log (attached). Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Platform: CentOS Linux 7

I have successfully completed recon-all on an older virtualbox (Windows host) version of Freesurfer with the same subject, so I do not think there is an issue with the subject data.

Any help would be hugely appreciated.

Thank you, Ariana Stickel

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