Hi,
In Tksurfer, we want to show functional activity map and borders of aparc on a surface. The borders of aparc are always drawn on top of the activity map, which sometimes hide small activation blobs. Is it possible to draw the activity map on top of the aparc borders?
Reza
Hi Reza
can you use freeview? We don't do any development on tksurfer and hardly use it anymore. Not sure if this is possible in freeview, I'll leave that for Ruopeng cheers Bruce On Wed, 29 Jun 2016, Reza Rajimehr wrote:
Hi, In Tksurfer, we want to show functional activity map and borders of aparc on a surface. The borders of aparc are always drawn on top of the activity map, which sometimes hide small activation blobs. Is it possible to draw the activity map on top of the aparc borders?
Reza
Hi Reza,
Right now in freeview aparc annotation is always drawn on top of overlays, just like in tkSurfer. I'll add an option draw it underneath the overlays.
Best, Ruopeng
On 06/29/2016 10:09 AM, Bruce Fischl wrote:
Hi Reza
can you use freeview? We don't do any development on tksurfer and hardly use it anymore. Not sure if this is possible in freeview, I'll leave that for Ruopeng cheers Bruce On Wed, 29 Jun 2016, Reza Rajimehr wrote:
Hi, In Tksurfer, we want to show functional activity map and borders of aparc on a surface. The borders of aparc are always drawn on top of the activity map, which sometimes hide small activation blobs. Is it possible to draw the activity map on top of the aparc borders?
Reza
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Yes, you can. If I remember correctly, you can goto view->configure overlay, then find the item to specify that you want the labels under the activation.
On 6/29/16 5:22 AM, Reza Rajimehr wrote:
Hi,
In Tksurfer, we want to show functional activity map and borders of aparc on a surface. The borders of aparc are always drawn on top of the activity map, which sometimes hide small activation blobs. Is it possible to draw the activity map on top of the aparc borders?
Reza
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
You can also do this now, by simply changing the alpha level of the colors in the CLUT, (note this only works in the dev version).
hth d
On Sat, Jul 2, 2016 at 1:46 PM, Douglas Greve greve@nmr.mgh.harvard.edu wrote:
Yes, you can. If I remember correctly, you can goto view->configure overlay, then find the item to specify that you want the labels under the activation.
On 6/29/16 5:22 AM, Reza Rajimehr wrote:
Hi,
In Tksurfer, we want to show functional activity map and borders of aparc on a surface. The borders of aparc are always drawn on top of the activity map, which sometimes hide small activation blobs. Is it possible to draw the activity map on top of the aparc borders?
Reza
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Bruce Fischl -
dgw -
Douglas Greve -
Reza Rajimehr -
Ruopeng Wang