yes, this is a know issue. It has been fixed for the next version, but you can upload a fixed linux program from ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_label2vol copy this to $FREESURFER_HOME/bin doug

David Grayson wrote:

Hi,

I am noticing that when I use ‘mri_label2vol --annot’ it is not creating the final label from the color table file. I tried using the --thresh 1 option, but that didn't work either. i.e...

mri_label2vol --annot lh.custom.annot --temp ../mri/orig.mgz --o custom_lh.nii.gz --subject FREESURFER --hemi lh --identity

The last index is no where to be found in the custom_lh.nii.gz. But the other indices look OK.

Has anyone encountered this before, and know what to do? Thanks very much!

David _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer