hi
Is it possible to embed a volume geometry in a surface file explicitly? I'm unable to find a mri_ or mris_ command which seems to do this. Is there any workaround via the GUI tools?
Thanks, Marmaduke
Marmaduke,
Could you describe what it is you want to do? What do you mean by volume geometry? What type of information do you want to put on the surface?
d
On Mon, Mar 7, 2016 at 2:31 PM, marmaduke woodman marmaduke.woodman@univ-amu.fr wrote:
hi
Is it possible to embed a volume geometry in a surface file explicitly? I'm unable to find a mri_ or mris_ command which seems to do this. Is there any workaround via the GUI tools?
Thanks, Marmaduke _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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the surface files do support embedding a ras2vox transform in them
On Mon, 7 Mar 2016, dgw wrote:
Marmaduke,
Could you describe what it is you want to do? What do you mean by volume geometry? What type of information do you want to put on the surface?
d
On Mon, Mar 7, 2016 at 2:31 PM, marmaduke woodman marmaduke.woodman@univ-amu.fr wrote:
hi
Is it possible to embed a volume geometry in a surface file explicitly? I'm unable to find a mri_ or mris_ command which seems to do this. Is there any workaround via the GUI tools?
Thanks, Marmaduke _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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sorry to bother, but can you elaborate? mris_convert --help doesn't show anything. ________________________________________ De : freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu de la part de Bruce Fischl fischl@nmr.mgh.harvard.edu
the surface files do support embedding a ras2vox transform in them
I mean that the mri_surface structure and the file format it uses both allow a vox2ras transform to be stored. I guess the matlab code doesn't support it, but it could be modified to do so if anyone was interested Bruce On Mon, 7 Mar 2016, WOODMAN Michael wrote:
sorry to bother, but can you elaborate? mris_convert --help doesn't show anything. ________________________________________ De : freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu de la part de Bruce Fischl fischl@nmr.mgh.harvard.edu
the surface files do support embedding a ras2vox transform in them
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On 03/07/2016 08:34 PM, dgw wrote:
Marmaduke,
Could you describe what it is you want to do? What do you mean by volume geometry? What type of information do you want to put on the surface?
I wish to approximate the effect of the --tval-xyz vol argument to mris_surf2surf in the dev version, which is not present in the stable version, where --tval-xyz is just a flag taking no arguments.
thanks, Marmaduke
Try mris_convert with --vol-geom option
On 03/07/2016 02:34 PM, dgw wrote:
Marmaduke,
Could you describe what it is you want to do? What do you mean by volume geometry? What type of information do you want to put on the surface?
d
On Mon, Mar 7, 2016 at 2:31 PM, marmaduke woodman marmaduke.woodman@univ-amu.fr wrote:
hi
Is it possible to embed a volume geometry in a surface file explicitly? I'm unable to find a mri_ or mris_ command which seems to do this. Is there any workaround via the GUI tools?
Thanks, Marmaduke _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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It isn't recognized:
$ mris_convert --vol-geom mri/T1.mgz ../fsaverage5/surf/lh.pial.tvb.bad surf/lh.pial.bad unknown option --vol-geom
I can stick with the dev version if no command line utility is available for this in the stable version. ________________________________________ De : freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu de la part de Douglas N Greve greve@nmr.mgh.harvard.edu Envoyé : mardi 8 mars 2016 00:08 À : freesurfer@nmr.mgh.harvard.edu Objet : Re: [Freesurfer] Embed vol geom in surf file
Try mris_convert with --vol-geom option
On 03/07/2016 02:34 PM, dgw wrote:
Marmaduke,
Could you describe what it is you want to do? What do you mean by volume geometry? What type of information do you want to put on the surface?
d
On Mon, Mar 7, 2016 at 2:31 PM, marmaduke woodman marmaduke.woodman@univ-amu.fr wrote:
hi
Is it possible to embed a volume geometry in a surface file explicitly? I'm unable to find a mri_ or mris_ command which seems to do this. Is there any workaround via the GUI tools?
Thanks, Marmaduke _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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