I just installed freesurfer on Mac OSX and everything went smoothly in installation. But now I am trying to source it, and it's not working. I typed 'csh' into the terminal to launch c-shell, and then entered:
[115-18-41-155-wireles1x:/Applications/freesurfer] Kat% setenv FREESURFER_HOME </Applications>/freesurfer [115-18-41-155-wireles1x:/Applications/freesurfer] Kat% source $FREESURFER_HOME/SetUpFreeSurfer.csh
And it returns:
/SetUpFreeSurfer.csh: No such file or directory.
I can see that the SetUpFreeSurfer.csh file is in the freesurfer folder, so I'm really not sure what is causing this error. I've tried doing this from different directories, too.
Thanks for any help.
Hi Kat
are you including the < and > in your setenv line? You shouldn't. It should be:
setenv FREESURFER_HOME /Applications/freesurfer
cheers Bruce
On Tue, 28 Jun 2011, Kat Mott wrote:
I just installed freesurfer on Mac OSX and everything went smoothly in installation. But now I am trying to source it, and it's not working. I typed 'csh' into the terminal to launch c-shell, and then entered:
[115-18-41-155-wireles1x:/Applications/freesurfer] Kat% setenv FREESURFER_HOME </Applications>/freesurfer [115-18-41-155-wireles1x:/Applications/freesurfer] Kat% source $FREESURFER_HOME/SetUpFreeSurfer.csh
And it returns:
/SetUpFreeSurfer.csh: No such file or directory.
I can see that the SetUpFreeSurfer.csh file is in the freesurfer folder, so I'm really not sure what is causing this error. I've tried doing this from different directories, too.
Thanks for any help.
freesurfer@nmr.mgh.harvard.edu