Hello users,
Is there any information available regarding the parameters used for N3 correction in the autorecon process?
Thanks,
Chacko.
sure. Check your recon-all.log - it should be in there (I think we use --n 2 and the default settings)
On Fri, 3 Nov 2006, Chacko Cherian wrote:
Hello users,
Is there any information available regarding the parameters used for N3 correction in the autorecon process?
Thanks,
Chacko.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Look in the recon-all script for the n3 command-line. You can also look at the subject/scripts/recon-all.log for the actually command-line used on your data.
doug
Chacko Cherian wrote:
Hello users,
Is there any information available regarding the parameters used for N3 correction in the autorecon process?
Thanks,
Chacko.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
also, the command:
recon-all -s <subjid> -nuintensitycor
will run just that stage.
On Fri, 2006-11-03 at 13:42 -0500, Doug Greve wrote:
Look in the recon-all script for the n3 command-line. You can also look at the subject/scripts/recon-all.log for the actually command-line used on your data.
doug
Chacko Cherian wrote:
Hello users,
Is there any information available regarding the parameters used for N3 correction in the autorecon process?
Thanks,
Chacko.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Chacko Cherian -
Doug Greve -
Nick Schmansky