Hi Freesurfer Community,
I have performed -seg-erode 1 during mri_segstats on resampled subcortical strutures (T1 to FA/MD). Can I view the eroded masks in T1 anatomical space to visually inspect whether PVE has been adequately accounted for?
Thank you.
Best Wishes, Elijah
You can load it as an overlay in freeview make sure to specify the registration file as that compted for the DTI. Also make sure to set the threshold to something like 0.5
On 04/11/2016 09:41 AM, Elijah Mak wrote:
Hi Freesurfer Community,
I have performed -seg-erode 1 during mri_segstats on resampled subcortical strutures (T1 to FA/MD). Can I view the eroded masks in T1 anatomical space to visually inspect whether PVE has been adequately accounted for?
Thank you.
Best Wishes, Elijah
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