Dear FreeSurfer Experts,
Could someone help me with a pipeline for creating a label from an edited existing label? I have aligned the aparc+aseg and its respective orig into ac-pc plane using AFNI. I then used fslmaths to make an ROI of just the rh_mid-frontal-gyrus. After editing the ROI using freeview, I am having trouble identifying which commands to use in order to create a new label and extracting the volume.
Thank you, Jae
Use mri_vol2label to create a label file. If you want the label on the surface, then use mri_label2label with the --paint option
On 01/09/2016 03:11 PM, Jae Cho wrote:
Dear FreeSurfer Experts,
Could someone help me with a pipeline for creating a label from an edited existing label? I have aligned the aparc+aseg and its respective orig into ac-pc plane using AFNI. I then used fslmaths to make an ROI of just the rh_mid-frontal-gyrus. After editing the ROI using freeview, I am having trouble identifying which commands to use in order to create a new label and extracting the volume.
Thank you, Jae
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Douglas N Greve -
Jae Cho