Hello,
I wonder if anyone else has had this problem on the Mac. I have now installed FreeSurfer (Tiger V4.0.5) on 3 machines, everytime I do this some of my shortcut X11 keys stop working.
We are running - X11 1.1.3 - on a Mac OS X 10.4.11
I would really appricate your help with this - Does anyone know how one may fix this.
Thank you Liat
----- Original Message ----- From: Krish Subramaniam krish@nmr.mgh.harvard.edu Date: Tuesday, June 17, 2008 12:54 pm Subject: Re: [Freesurfer] tkmedit --> tksurfer (tkmedit points not being saved)
Aaron and Bruce,
Looks like tkmedit saves edit.dat in the directory from which it is
invoked, but tksurfer tries to load edit.dat from the tmp/edit.dat in the subject dir.
A simple workaround is to setenv a variable called FS_SAVE_GOTO_POINT to a filename where you want both tkmedit and tksurfer to read/save
the points. Like,
setenv FS_SAVE_GOTO_POINT <subject_dir>/tmp/point.dat
This should work.
Anyway, tkmedit should try and save the point to the standard ( documented ) location <subject_dir>/tmp/edit.dat and if it can't it should save it to the ./edit.dat... will try and fix this.
Best, Krish
On Jun 16, 2008, at 8:35 PM, Bruce Fischl wrote:
the points are stored in the subject's tmp/edit.dat dir. Does
that
file exist? Is there any error in either of the terminal windows?
On Mon, 16 Jun 2008, Aaron Shmookler wrote:
Although new to Freesurfer, I have in the past been able to save
points on tkmedit and bring them up on an inflated tksurfer image.
However,
now this is not happening. When I click on Save Point or go to
Tools>Save
Point in tkmedit, no coordinates are brought up in the tkmedit Terminal window. So, when I try to bring up points on tksurfer (goto saved point) no points are shown.
Help would be greatly appreciated.
Thanks, Aaron
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Liat Levita