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Dear Free Surfer team,
I am visually checking for errors in every step of the recon-all process.
In the skull stripping stage, some participants have left skull behind, but the grey matter (gm) and white matter (wm) separation is right. Should I edit the brainmask image in order to make that no skull is left behind even when the gm and wm are fine?
Best regards, Rosalia
freesurfer@nmr.mgh.harvard.edu