External Email - Use Caution

Dear Freesurfers,

as already mentioned in a mailing list post (https://secure-web.cisco.com/1SAqhNan43pmaxS84P-6UvHZVgMO0LlOO5VahC9RJjjs3L5...), subfield_segmentation in FS v7.3.2 does not create a statsfile including the output volumes. Instead, some txt file is created in /mri (i.e., ThalamusNuclei.volumes.txt). For summarizing the volumes across subjects, neither asegstats2table (because it looks for *.stats files) nor the quantifyThalamicNuclei.sh is applicable to the new function subfield_segmentation output directly. I've just adapted quantifyThalamicNuclei.sh and changed line 55 to the new version txt file names (see attached).

Best, Melissa