External Email - Use Caution
Hi Experts,
I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this function, please help to share. I only find knowledge about group analysis. Thank you so much and I really appreciate it!
Best, Qi
External Email - Use Caution
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Qi qi.zeng@icahn.mssm.edu Sent: Friday, August 13, 2021 12:03 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] visualizing regional significant correlation with clinical traits by group
External Email - Use Caution
Hi Experts,
I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this function, please help to share. I only find knowledge about group analysis. Thank you so much and I really appreciate it!
Best, Qi
External Email - Use Caution
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
________________________________ From: Del Re, Elisabetta Elisabetta_DelRe@hms.harvard.edu Sent: Friday, August 13, 2021 7:09 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Cc: Elisabetta del Re- Harvard elisabettacdelre@gmail.com Subject: Re: [Freesurfer] visualizing regional significant correlation with clinical traits by group
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Qi qi.zeng@icahn.mssm.edu Sent: Friday, August 13, 2021 12:03 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] visualizing regional significant correlation with clinical traits by group
External Email - Use Caution
Hi Experts,
I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this function, please help to share. I only find knowledge about group analysis. Thank you so much and I really appreciate it!
Best, Qi
We don't have post vs ant insula, but have you looked at the aparc.2009s.annot? It has a much finer insula segmentation. You might be able to merge some of those labels to get what you want. Otherwise, you can split the big insula label in the aparc with mris_divide_parcellation
On 8/13/2021 7:11 AM, Del Re, Elisabetta wrote:
External Email - Use Caution
External Email - Use Caution
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
*From:* Del Re, Elisabetta Elisabetta_DelRe@hms.harvard.edu *Sent:* Friday, August 13, 2021 7:09 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Cc:* Elisabetta del Re- Harvard elisabettacdelre@gmail.com *Subject:* Re: [Freesurfer] visualizing regional significant correlation with clinical traits by group Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Qi qi.zeng@icahn.mssm.edu *Sent:* Friday, August 13, 2021 12:03 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] visualizing regional significant correlation with clinical traits by group
External Email - Use Caution
Hi Experts,
I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this function, please help to share. I only find knowledge about group analysis. Thank you so much and I really appreciate it!
Best, Qi
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1vMpKvR-K2389OfL72midZZvbxRXlfl47e5veENtZvU6NZ1...
External Email - Use Caution
Thank you so much. We’ll try, Best, Elisabetta
Sent from my iPhone
On Aug 17, 2021, at 5:38 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
We don't have post vs ant insula, but have you looked at the aparc.2009s.annot? It has a much finer insula segmentation. You might be able to merge some of those labels to get what you want. Otherwise, you can split the big insula label in the aparc with mris_divide_parcellation
On 8/13/2021 7:11 AM, Del Re, Elisabetta wrote:
External Email - Use Caution
External Email - Use Caution
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
________________________________ From: Del Re, Elisabetta Elisabetta_DelRe@hms.harvard.edumailto:Elisabetta_DelRe@hms.harvard.edu Sent: Friday, August 13, 2021 7:09 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Cc: Elisabetta del Re- Harvard elisabettacdelre@gmail.commailto:elisabettacdelre@gmail.com Subject: Re: [Freesurfer] visualizing regional significant correlation with clinical traits by group
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Qi qi.zeng@icahn.mssm.edumailto:qi.zeng@icahn.mssm.edu Sent: Friday, August 13, 2021 12:03 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] visualizing regional significant correlation with clinical traits by group
External Email - Use Caution
Hi Experts,
I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this function, please help to share. I only find knowledge about group analysis. Thank you so much and I really appreciate it!
Best, Qi
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1vMpKvR-K2389OfL72midZZvbxRXlfl47e5veENtZvU6NZ1...https://secure-web.cisco.com/1w69f-5cWpdp0R2IhjBuG2vXqbyHtPYTF6vnCpbBvjFMOGIAu72A6BC4TmlAtXYadoLRUtGKk01affSfo2inC1CaFXEo98EgmRlaMMyyn3I9nYezo9cJ0wpvlWEJoSVgFPOapUf2KDSjUhbcyoK2WpBWJ8oeFjZQSG1BFxqo1x2PNJ_f11ULPSVAq6xKInZ0UGZAJUKg6Ap4Zmm0fNC7KH8ZqC95gZMqcXHlM99KwxZ8kFSfz1-O0lgNq8zHk-aO8605kcGTwoDWImIn4oMzopw/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__secure-2Dweb.cisco.com_1vMpKvR-2DK2389OfL72midZZvbxRXlfl47e5veENtZvU6NZ1xAaFCFWVldOj3SVZwf2WUFZdZcpT5lPMbFMoIhSWawzZQbrJ7ObAUNBpUoBRbo-5FGK6yaS70zZfY8Jot3jkt39aegv7eCncItuWsqdYExudzaXKR25yWufsOVa9DQn4wk5B1-2DqapZQSLSxD-5FmBaDRlZGArBKhOxeasXme4dv1HaSg-5FmvfFdrblRQG42OVxUtPhn8GASuXMsnFNa3qg3SfZU70mt6AjfPuV0z-2DC5Hw_https-253A-252F-252Fmail.nmr.mgh.harvard.edu-252Fmailman-252Flistinfo-252Ffreesurfer%26d%3DDwMD-g%26c%3DWO-RGvefibhHBZq3fL85hQ%26r%3DKlJbht4h1i6aPJHMk7qSgoiYID4UiBhKWpU1g8jq1jE%26m%3DGcJrDmLBx3IGOoNMd8Laf4_3OYeN_-Kb8HfHzp2oe1w%26s%3DF3DE-CsC1fmgLgVpKe6ADUxmahnhBUxI0m80O2tt0YE%26e%3D
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1CN5UTJfPlPUkVwAijH2GgUZyV6A27dbQylvPRJt_CGdUPo... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/1fZAjJT9kYnNxPfj3feHOcvufhGsjFGmfnre8iSSvzicFPmj... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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Hi Elisabetta -
Following up from what Doug mentioned, if you're gonna subdivide the Insula, you may want to consider a function-based triplicate division: Dorsal Anterior Insula, Ventral Anterior Insula and Posterior Insula. I have attached an image that explains this.
best,
Alan
On Tue, Aug 17, 2021 at 7:45 PM Del Re, Elisabetta < Elisabetta_DelRe@hms.harvard.edu> wrote:
External Email - Use CautionThank you so much. We’ll try, Best, Elisabetta
Sent from my iPhone
On Aug 17, 2021, at 5:38 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
We don't have post vs ant insula, but have you looked at the aparc.2009s.annot? It has a much finer insula segmentation. You might be able to merge some of those labels to get what you want. Otherwise, you can split the big insula label in the aparc with mris_divide_parcellation
On 8/13/2021 7:11 AM, Del Re, Elisabetta wrote:
External Email - Use Caution External Email - Use CautionDear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
*From:* Del Re, Elisabetta Elisabetta_DelRe@hms.harvard.edu Elisabetta_DelRe@hms.harvard.edu *Sent:* Friday, August 13, 2021 7:09 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Cc:* Elisabetta del Re- Harvard elisabettacdelre@gmail.com elisabettacdelre@gmail.com *Subject:* Re: [Freesurfer] visualizing regional significant correlation with clinical traits by group
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Qi qi.zeng@icahn.mssm.edu qi.zeng@icahn.mssm.edu *Sent:* Friday, August 13, 2021 12:03 AM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] visualizing regional significant correlation with clinical traits by group
External Email - Use CautionHi Experts,
I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this function, please help to share. I only find knowledge about group analysis. Thank you so much and I really appreciate it!
Best, Qi
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://secure-web.cisco.com/1vMpKvR-K2389OfL72midZZvbxRXlfl47e5veENtZvU6NZ1... https://secure-web.cisco.com/1w69f-5cWpdp0R2IhjBuG2vXqbyHtPYTF6vnCpbBvjFMOGIAu72A6BC4TmlAtXYadoLRUtGKk01affSfo2inC1CaFXEo98EgmRlaMMyyn3I9nYezo9cJ0wpvlWEJoSVgFPOapUf2KDSjUhbcyoK2WpBWJ8oeFjZQSG1BFxqo1x2PNJ_f11ULPSVAq6xKInZ0UGZAJUKg6Ap4Zmm0fNC7KH8ZqC95gZMqcXHlM99KwxZ8kFSfz1-O0lgNq8zHk-aO8605kcGTwoDWImIn4oMzopw/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__secure-2Dweb.cisco.com_1vMpKvR-2DK2389OfL72midZZvbxRXlfl47e5veENtZvU6NZ1xAaFCFWVldOj3SVZwf2WUFZdZcpT5lPMbFMoIhSWawzZQbrJ7ObAUNBpUoBRbo-5FGK6yaS70zZfY8Jot3jkt39aegv7eCncItuWsqdYExudzaXKR25yWufsOVa9DQn4wk5B1-2DqapZQSLSxD-5FmBaDRlZGArBKhOxeasXme4dv1HaSg-5FmvfFdrblRQG42OVxUtPhn8GASuXMsnFNa3qg3SfZU70mt6AjfPuV0z-2DC5Hw_https-253A-252F-252Fmail.nmr.mgh.harvard.edu-252Fmailman-252Flistinfo-252Ffreesurfer%26d%3DDwMD-g%26c%3DWO-RGvefibhHBZq3fL85hQ%26r%3DKlJbht4h1i6aPJHMk7qSgoiYID4UiBhKWpU1g8jq1jE%26m%3DGcJrDmLBx3IGOoNMd8Laf4_3OYeN_-Kb8HfHzp2oe1w%26s%3DF3DE-CsC1fmgLgVpKe6ADUxmahnhBUxI0m80O2tt0YE%26e%3D
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1pUNC7juJ5bahXm90d4xTjk3LyWHIwH2w2CQX_YpPLCgrz-... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/1XSLTKBn4vrcaHIpOyzKiskhxXjlrzHvg--fanGPl5qDtQEv... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1pUNC7juJ5bahXm90d4xTjk3LyWHIwH2w2CQX_YpPLCgrz-...
External Email - Use Caution
Thank you Alan, best, Elisabetta
On Aug 18, 2021, at 12:30 PM, Alan Francis alandarkenergy@gmail.com wrote:
External Email - Use Caution
Hi Elisabetta -
Following up from what Doug mentioned, if you're gonna subdivide the Insula, you may want to consider a function-based triplicate division: Dorsal Anterior Insula, Ventral Anterior Insula and Posterior Insula. I have attached an image that explains this.
best,
Alan
On Tue, Aug 17, 2021 at 7:45 PM Del Re, Elisabetta <Elisabetta_DelRe@hms.harvard.edumailto:Elisabetta_DelRe@hms.harvard.edu> wrote:
External Email - Use Caution
Thank you so much. We’ll try, Best, Elisabetta
Sent from my iPhone
On Aug 17, 2021, at 5:38 PM, Douglas N. Greve <dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu> wrote:
We don't have post vs ant insula, but have you looked at the aparc.2009s.annot? It has a much finer insula segmentation. You might be able to merge some of those labels to get what you want. Otherwise, you can split the big insula label in the aparc with mris_divide_parcellation
On 8/13/2021 7:11 AM, Del Re, Elisabetta wrote:
External Email - Use Caution
External Email - Use Caution
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
________________________________ From: Del Re, Elisabetta Elisabetta_DelRe@hms.harvard.edumailto:Elisabetta_DelRe@hms.harvard.edu Sent: Friday, August 13, 2021 7:09 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Cc: Elisabetta del Re- Harvard elisabettacdelre@gmail.commailto:elisabettacdelre@gmail.com Subject: Re: [Freesurfer] visualizing regional significant correlation with clinical traits by group
Dear Freesurfer team, I am looking for segmentation of the anterior versus posterior insula. Does FreeSurfer provide that? Many thanks, regards, Elisabetta
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Qi qi.zeng@icahn.mssm.edumailto:qi.zeng@icahn.mssm.edu Sent: Friday, August 13, 2021 12:03 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] visualizing regional significant correlation with clinical traits by group
External Email - Use Caution
Hi Experts,
I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this function, please help to share. I only find knowledge about group analysis. Thank you so much and I really appreciate it!
Best, Qi
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Alan N. Francis PhD Assistant Professor of Neuroscience Institute of Neuroscience University of Texas, School of Medicine Rio Grande Valley Texas.
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