Thanks all, I did it :)

Cheers Giusy

Inviato da iPhone

Il giorno 28/ago/2013, alle ore 18:40, Avram Holmes holmes@wjh.harvard.edu ha scritto:

check the .vol values I think they should match those from read_curv.

Avram

On Wed, Aug 28, 2013 at 11:37 AM, Giusy Chinnici giusy.chinnici@gmail.com wrote:

...

Thanks all,

I opened the file subj/surf/?h.thickness with MATLAB using the function read_curv(subj/surf/lh.thickness). I obtained a vector with dimensions nverticesX1, but I need also the vertex IDs. Are vertex IDs in the thickness file ordered from 0 to n? Is there some other way to obtain a table with vertex IDs and the corresponding thickness values?

@avram:as you suggested, I tryed to use MRIread('subj/surf/lh.thickness.mgh'), it doesn't return the desired values. You can find the result in the attachment .

thanks Giusy

2013/8/28 Avram Holmes holmes@wjh.harvard.edu

...

Giusy,

You can access vertex level info in Matlab with MRIread('SUBJECT.FILENAME').

Avram

On Wed, Aug 28, 2013 at 8:42 AM, Giusy Chinnici giusy.chinnici@gmail.com wrote:

...

Dear all,

Is there available a function that, given a certain ROI, returns per vertex thickness (not the average thickness)?

Thanks Cheers

Giusy Chinnici _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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-- Avram Holmes PhD Instructor in Psychiatry, Harvard Medical School Assistant in Research, Massachusetts General Hospital

-- Giusy Chinnici

-- Avram Holmes PhD Instructor in Psychiatry, Harvard Medical School Assistant in Research, Massachusetts General Hospital