External Email - Use Caution
Dear Freesurfer developers,
I'm hoping you can help me once again. Right now I'm working on how to extract certain measurements out of my data set. I have two groups and MRI data from one time point in elderly people. The data quality is pretty bad but for pilot analysis I want to analyze the gray matter volume difference in some ROI's. I've already found the total GM volume in the aseg-stats as well as the hippocampal volumes but I couldn't find any of these ROI's: subiculum, parahippocampal gyrus,Central sulcus, Cingulate cortex, left frontal cortex, central premotor cortex, ventral premotor cortex.
Are any of these regions found in the Freesurfer output or is there a way to generate them? Has Freesurfer even a way to automatically identify these regions?
My Set-up: Freesurfer Version: 7.1 Plattform: Ubuntu 18.04
Thank you in advance for the help!
Best regards,
Nils
look in ?h.aparc.stats files
On 4/27/2021 2:17 PM, Nils B. wrote:
External Email - Use Caution
Dear Freesurfer developers,
I'm hoping you can help me once again. Right now I'm working on how to extract certain measurements out of my data set. I have two groups and MRI data from one time point in elderly people. The data quality is pretty bad but for pilot analysis I want to analyze the gray matter volume difference in some ROI's. I've already found the total GM volume in the aseg-stats as well as the hippocampal volumes but I couldn't find any of these ROI's: subiculum, parahippocampal gyrus,Central sulcus, Cingulate cortex, left frontal cortex, central premotor cortex, ventral premotor cortex.
Are any of these regions found in the Freesurfer output or is there a way to generate them? Has Freesurfer even a way to automatically identify these regions?
My Set-up: Freesurfer Version: 7.1 Plattform: Ubuntu 18.04
Thank you in advance for the help!
Best regards,
Nils
Nils Böer Research Assistant with Bachelor Degree (WHB) *Psychology and Movement Science* University of Paderborn Department of Sports and Health Warburger Str. 100 33098 Paderborn Room: Sp 1.401
Email: nils.tobias94@gmail.com / nboeer@mail.uni-paderborn.de mailto:nils.tobias94@gmail.com Web: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://sug.uni-paderborn.de/en/sport/sportpsychologie/team/ https://secure-web.cisco.com/1WVj0EcABQ4b3chjPYhYGhDOux-whaYVbSMnsWR9otFaBIBjZfTz-bhXITa2fOlbdfiVDl0VXQYg0ZkCL91ymmIUe2FaV7YcUPgoHYujsOqVXzRXr7BceJEUHsIS5SVJSFjx6Lxk2cnGyykGJKDUqlkywt1PhNzk3SSkRCzKCzcE7fgm0HUG900zFeeV_pVCCCA14nbiim5WoW6SgmLPmY-Dh3A0uuuFt9tg6gYzH_PyJIymopVBrdTMNk02wk_625ehumBcngpvZCCxxDW2XaA/https%3A%2F%2Fsug.uni-paderborn.de%2Fen%2Fsport%2Fsportpsychologie%2Fteam%2F *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://sug.uni-paderborn.de/department/it/ https://secure-web.cisco.com/1WVj0EcABQ4b3chjPYhYGhDOux-whaYVbSMnsWR9otFaBIBjZfTz-bhXITa2fOlbdfiVDl0VXQYg0ZkCL91ymmIUe2FaV7YcUPgoHYujsOqVXzRXr7BceJEUHsIS5SVJSFjx6Lxk2cnGyykGJKDUqlkywt1PhNzk3SSkRCzKCzcE7fgm0HUG900zFeeV_pVCCCA14nbiim5WoW6SgmLPmY-Dh3A0uuuFt9tg6gYzH_PyJIymopVBrdTMNk02wk_625ehumBcngpvZCCxxDW2XaA/https%3A%2F%2Fsug.uni-paderborn.de%2Fen%2Fsport%2Fsportpsychologie%2Fteam%2F
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
Nils B.