Freesurfer v5.3 will fail at the mri_nu_correct.mni command on newer Linux distributions (that come with perl version 5.22 and higher) due to an incompatibility with the mni tools shipped with FreeSurfer and newer versions of perl. The issue has been fixed in the latest release of freesurfer.

On Mar 13, 2017, at 7:01 AM, David WALTER david.walter@ens.fr wrote:

Hello FreeSurfer Developers,

I’m trying with an engineer to launch a recon-all command but it seems to fail and I don’t find any verbose logs to help me to understand what is the problem.

Please find in attachment all the logs I have and we are on CentOS 6.8

Thanks for your help

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David WALTER The computer guy david.walter@ens.fr 01/44/32/27/94

INSERM U960 Laboratoire de Neurosciences Cognitives Ecole Normale Supérieure 29, rue d'Ulm 75005 Paris

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<csurfdir> <recon-all.env> <recon-all.env.bak> <recon-all.error> <recon-all.local-copy> <recon-all.log> <recon-all-status.log> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer