you can do that with the m-files we distribute (read_surf.m and read_annotation.m)

cheers Bruce

On Thu, 1 Jun 2017, Almarshad F. wrote:

Yes I did .. the thing I need now is to get my parcellated sphere into Matlab (including the parcellation )

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 27 May 2017 16:00 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] parcellated hemisphere into matlab

Hi Fatima

have you run the data through recon-all? Bruce n Thu, 25 May 2017, Almarshad F. wrote:

...

Dear Freesurfer expert;

I’m new to Freesurfer and confused about the workflow ..

I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolation by creating my own labels and .annot file

I don’t know what is the next step to get the parcellated hemisphere into matlab

Thanks in advance

Yours sincerely, Fatima

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer