Dear Freesurfer expert;
I'm new to Freesurfer and confused about the workflow ..
I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolation by creating my own labels and .annot file I don't know what is the next step to get the parcellated hemisphere into matlab
Thanks in advance
Yours sincerely, Fatima
try $FREESURFER_HOME/matlab/read_annotation.
On 05/25/2017 03:21 PM, Almarshad F. wrote:
Dear Freesurfer expert;
I’m new to Freesurfer and confused about the workflow ..
I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolation by creating my own labels and .annot file
I don’t know what is the next step to get the parcellated hemisphere into matlab
Thanks in advance
Yours sincerely, Fatima
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Fatima
have you run the data through recon-all? Bruce n Thu, 25 May 2017, Almarshad F. wrote:
Dear Freesurfer expert;
I’m new to Freesurfer and confused about the workflow ..
I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolation by creating my own labels and .annot file
I don’t know what is the next step to get the parcellated hemisphere into matlab
Thanks in advance
Yours sincerely, Fatima
Yes I did .. the thing I need now is to get my parcellated sphere into Matlab (including the parcellation )
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 27 May 2017 16:00 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] parcellated hemisphere into matlab
Hi Fatima
have you run the data through recon-all? Bruce n Thu, 25 May 2017, Almarshad F. wrote:
Dear Freesurfer expert;
I’m new to Freesurfer and confused about the workflow ..
I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolation by creating my own labels and .annot file
I don’t know what is the next step to get the parcellated hemisphere into matlab
Thanks in advance
Yours sincerely, Fatima
you can do that with the m-files we distribute (read_surf.m and read_annotation.m)
cheers Bruce
On Thu, 1 Jun 2017, Almarshad F. wrote:
Yes I did .. the thing I need now is to get my parcellated sphere into Matlab (including the parcellation )
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 27 May 2017 16:00 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] parcellated hemisphere into matlab
Hi Fatima
have you run the data through recon-all? Bruce n Thu, 25 May 2017, Almarshad F. wrote:
Dear Freesurfer expert;
I’m new to Freesurfer and confused about the workflow ..
I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolation by creating my own labels and .annot file
I don’t know what is the next step to get the parcellated hemisphere into matlab
Thanks in advance
Yours sincerely, Fatima
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu