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Hi all,

Just a follow-up to report how to fix this issue.

1. I uninstalled my 7.2.0 tar installation 2. Updated my system using: * sudo apt-get update && sudo apt-get upgrade && sudo apt-get dist-upgrade sudo apt-get install -f 3. Installed xorg-dev following the isntructions from https://secure-web.cisco.com/1uyxJZhlPnPOIdA9nned9bq583KtYUcWz7KlVedz6uYOyn6... * sudo apt-get update -y sudo apt-get install -y xorg-dev 4. Reinstalled 7.2.0 following the instructions from fsbuild using the freesurfer_7.2.0_amd64.deb file.

This seems to have fixed the issue. I can now run FS binaries like mri_vol2vol and mri_aparc2aseg.

Best,

Luis

________________________________ From: Alvarado,Luis R luis.alvarado@louisville.edu Sent: Tuesday, November 2, 2021 3:23 PM To: fsbuild fsbuild@contbay.com; freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Problem with FS 7.1.2 binaries: libcrypt.so.1: version `XCRYPT_2.0' not found

Thank you for the fast response.

I had a typo in my original message. when I said 7.1.2, I really meant 7.2. I originally installed it using the freesurfer-linux-ubuntu18_amd64-7.2.0.tar.gz archive file. The issue with the binaries was with 7.2.0.

I uninstalled that version and I am trying to re-install it using the .deb file.

I am getting the following error message while trying to install freesurfer_7.2.0_amd64.deb as suggested:

$ sudo apt-get install ./freesurfer_7.2.0_amd64.deb Reading package lists... Done Building dependency tree Reading state information... Done Note, selecting 'freesurfer' instead of './freesurfer_7.2.0_amd64.deb' Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation:

The following packages have unmet dependencies: freesurfer : Depends: xorg-dev but it is not going to be installed E: Unable to correct problems, you have held broken packages.

any thoughts?

--Luis

From: fsbuild fsbuild@contbay.com Date: Tuesday, November 2, 2021 at 7:01 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Cc: "Alvarado,Luis R" luis.alvarado@louisville.edu Subject: Re: [Freesurfer] Problem with FS 7.1.2 binaries: libcrypt.so.1: version `XCRYPT_2.0' not found

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Hello Luis,

This looks like an issue reported after people upgraded their Ubuntu systems causing the linker to find the wrong version of that library, e.g.,

https://secure-web.cisco.com/1EZOGxul5QsqH8V1OvHrGjhJ1TC_KmqqItKcdZhnvo3hTas...https://secure-web.cisco.com/14OjrgUIXo4QO-8nDwO7pl3oHnOz71mlpCVpyMkug7wKOxiYCvIs5MVrGp0KbSNKible_Kizwj4hGAJGl1n2kw-8G9AT9Sql-jjXzZTdfRoxY2f7CWkaD38ev9InfOKHg6b-ePgCwCZ5pxnReDaavC_GOpgjAMDbQL7ntpsGPeGqmkZejrpQZLkLcIZND0QT2NyUNplOWYsrj7z8fdpLVy8F3MJxsUIM5OrjUYLBBInmqIjxHwo4_mOgN5cBI9ttPEB7mzXO0sM9S5Rz__BkmrA/https%3A%2F%2Fnam11.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fubuntuforums.org%252Fshowthread.php%253Ft%253D2438576%26data%3D04%257C01%257Cluis.alvarado%2540louisville.edu%257C06d42e638ce84c7b2d6608d99defed1c%257Cdd246e4a54344e158ae391ad9797b209%257C0%257C0%257C637714476671012879%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C0%26sdata%3DTZw%252F3YPeAU4%252BpnOCvOTSjTNfdwRoKv2ELZ6cvhCYFKw%253D%26reserved%3D0

https://secure-web.cisco.com/1kFLw4bcEefcsQsueFByPn1Wq7qidxVkPcwljveeILKLPMd...https://secure-web.cisco.com/13oaiA8W17nqHS09_mGAHdN53Qo-78Htz3KgGaWXDqRfWIn6BUDJ9ESCc5YINudF_GILFbIdbTUpNg1QVJ7IT8JZKlGlMy3iZ-TNx2hy_K95D80NlJ1MBKutXFdTez7IUfCqggT8ykcnj2M8SegfHozcpyqMvUUGCY5SYg24zKT6iJfASjzea3bGF15GCvkJKvI1Gf55MKiY9ODh2imCSY5bo9xibKUFDppks_AbzcCXDuFvKXRRzTrUooY00jtkyuNzW6h2S-C1x8Q4gO7fH-Q/https%3A%2F%2Fnam11.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fgithub.com%252Fpmq20%252Fruby-packer%252Fissues%252F131%26data%3D04%257C01%257Cluis.alvarado%2540louisville.edu%257C06d42e638ce84c7b2d6608d99defed1c%257Cdd246e4a54344e158ae391ad9797b209%257C0%257C0%257C637714476671022833%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C0%26sdata%3DpboxJFLmhGT81%252FAE8uKBc%252BxhqxcgwUTM8AykIEy8KZo%253D%26reserved%3D0

As of the 7.2.0 release, there is a .deb installer package you can use if you have admin/root privileges. If there is an issue with the wrong version of libraries on your system, running the installer might update them.

$ wget https://secure-web.cisco.com/1qQn_kJ3gfRIMA7OtJsh5FIUo2k360Sik17NG33XQViZh4y...https://secure-web.cisco.com/1RHHWRJGCCc4H4MkNP_B7nU6cNNsVWadgyrLpB0tyfyLelLCgx8S7xne08K_OxAUKOcUfAuNtQ2vjSE5BH079f4zstM88f1E5_qU3w9V9xnOV5wqQqdD0cRbPWZZ-m1FfVGe7UwH0U-wVYc4QdgQoLX-vU3Nuv5tb03FT5QrcjjiPJTolnAvfJaII9FrztT4KENM-nw5OeUAuQDrKY6coWOwppWXHndDIUPCLF5w_pRDWlnTvn6nAWMZmXY9WP_XtJVQh1g0O3Msx2yddIAjLpA/https%3A%2F%2Fsurfer..nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.2.0%2Ffreesurfer_7.2.0_amd64.deb

$ sudo apt-get install ./freesurfer_7.2.0_amd64.deb

- which should give you /usr/local/freesurfer/7.2.0

You can always uninstall it.

- R.

On Nov 1, 2021, at 20:54, Alvarado,Luis R luis.alvarado@louisville.edu wrote:

/lib/x86_64-linux-gnu/libcrypt.so.1: version `XCRYPT_2.0' not found